Take a picture of the labels that are clearly visible on the controller, tape them in place and snap a picture. Add your own text to the image if you have to so you clearly see what each wire is labelled. Print one out to save a hard copy, and save a copy on your computer in digital format.
Over time the labels fade, and perhaps you want an extra feature of the controller or you want to see what features it had in a years time when all the labels have faded and you want to find that pas wire, good luck.
edit - Wouldnt it be nice to have the wires insulation, lazer printed & etched all along the wires printed "I.D. text line"
Its like having good quality tools with lazer etched size markings.
Actually I thought about this a few yrs back, you know how computer pc psu's can have modular wires to connect to on the psu so you dont have a bundle of unused wires. Do the same with controllers, need less unused wires getting in the way of any aspect of having fun on an ebike.