Alright, Brum. Sounds like you're having very much similar experiences with Adaptto/Cro guessing V3 as I did. Autodetect 1:5 works, but then not properly comparing it to the HS3540 on the other bike.
Once you've checked from where your smoke damage came from, I'd highly recommend not bothering with Autodetect and do a manual setup. It's a little bit more faffing, but if you get bored and try the Autodetect again it'll likely sod all your hard work up. I've foolishly 'thought' it would be a good idea.. twice. Btw my Cro stopped abruptly at speed too, hall wire came loose n shorted, instant RMA
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If you insist on running Autodetect, the 'best' method for a 1:5 chance of a 'rough' detect, stop your hub rotating for first 5-10 secs where it appears to set hall phase sequence, ensure you set your maximum speed (in eco/norm/boost para) to 85% ish of your estimated freewheel speed. This should stop the motor going bonkers towards the end. You'll still need to fine tune the hall angles and hall/motor response time.
Its a great time saving tool, however it isn't something you 'need' to do, just input settings manually once the hub is rotating in the correct direction
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Edit- As for hall watching although 001-111 etc try looking at the H1-6 instead for correct hall sequencing.
Madin8 - C63 are for overcurrent protection, for example my A123 20ah could go 10C = 200amps on the poor little Mini-E that can only take 65ish Amp. Instead of blowing up a controller on fault the breaker will trip and save primarily 'me'the user from a thumping great belt
. Reason for spark is an immediate in-rush demand from the controller, anti-spark kinda trickle feeds the caps instead of dumping it in a oner. Hence if you leave batt connected all the time caps are charged n waiting for fets to allow them to dump their load
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Nother Edit - Mini-E has x1 63a breaker coz max batt demand is 60-65A constant'ish and Max-E has x2 coz 160a max batt constant'ish, however it'd be interesting to see a MAX-E pull 160amps for more than the few seconds it takes to trip the x2 breakers
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